PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009765270.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 492aa MW: 53355.2 Da PI: 4.2197

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009765270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	403	427	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_009765270.1 403 CGSCRQLLTYPQGAKLVKCSCCQTV 427 ************************9 PP
2	zf-LSD1	44	3.6e-14	441	465	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_009765270.1 441 CGGCAVLLMYPYGAPSVRCSSCRHM 465 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.6E-16	400	430	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	403	427	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.8E-10	438	466	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	441	464	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED KDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC 300 AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQEG 360 TKNEEVRPPI EKQPTSHLSR IKPTAPQSSL PATSSAEMGQ MVCGSCRQLL TYPQGAKLVK 420 CSCCQTVNFV LEAHEVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA HNRRPPLSVQ 480 QARRRHPSYQ VH

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP  120
PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED KDNGPPPGWE LTPQLQPLQT  180
STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD  240
IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC  300
AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQEG  360
TKNEEVRPPI EKQPTSHLSR IKPTAPQSSL PATSSAEMGQ MVCGSCRQLL TYPQGAKLVK  420
CSCCQTVNFV LEAHEVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA HNRRPPLSVQ  480
QARRRHPSYQ VH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765270.1	0.0	PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X1
TrEMBL	A0A1U7VTM0	0.0	A0A1U7VTM0_NICSY; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X1
STRING	XP_009765270.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	6e-35	lsd one like 2