PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009765273.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 477aa MW: 51619.3 Da PI: 4.2017

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009765273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.9	1.4e-12	388	412	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_009765273.1 388 CGSCRQLLTYPQGAKLVKCSCCQTV 412 ************************9 PP
2	zf-LSD1	44.1	3.4e-14	426	450	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_009765273.1 426 CGGCAVLLMYPYGAPSVRCSSCRHM 450 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.3E-16	385	415	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	388	412	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.5E-10	423	451	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	426	449	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED KDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC 300 AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQPT 360 SHLSRIKPTA PQSSLPATSS AEMGQMVCGS CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE 420 VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM TKIGAHNRRP PLSVQQARRR HPSYQVH

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP  120
PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED KDNGPPPGWE LTPQLQPLQT  180
STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD  240
IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAALAFV DVEMGSKQQC  300
AVEKEGHPPG SSIPMAGHSS PPTPPPQSSS SVASSEMEMG SKQEGTKNEE VRPPIEKQPT  360
SHLSRIKPTA PQSSLPATSS AEMGQMVCGS CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE  420
VGQVKCGGCA VLLMYPYGAP SVRCSSCRHM TKIGAHNRRP PLSVQQARRR HPSYQVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765273.1	0.0	PREDICTED: protein piccolo-like isoform X4
TrEMBL	A0A1U7VFZ0	0.0	A0A1U7VFZ0_NICSY; protein piccolo-like isoform X4
STRING	XP_009765270.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-35	lsd one like 2