PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766251.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 185aa MW: 21261.8 Da PI: 9.619

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.2	8.7e-16	5	64	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +L+e+++k +p+a++ ++ +++l +++++ ++WFqN++a+ekk XP_009766251.1 5 TRWSPTPEQLMTLQEMYRKgLTNPNAAQLQRVTDHLslfgKIETKFFFYWFQNHKAREKK 64 8***************99*************************************8 PP
2	Wus_type_Homeobox	94	1.4e-30	4	65	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++ L+e+y++Gl +Pn++++qr+t +L+ +Gkie k fyWFQN+kaRe++k XP_009766251.1 4 HTRWSPTPEQLMTLQEMYRKGLTNPNAAQLQRVTDHLSLFGKIETKFFFYWFQNHKAREKKK 65 69**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.345	1	65	IPR001356	Homeobox domain
SMART	SM00389	7.6E-4	2	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.45E-8	4	71	IPR009057	Homeodomain-like
Pfam	PF00046	2.4E-13	5	64	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-5	6	65	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTGHTRWSPT PEQLMTLQEM YRKGLTNPNA AQLQRVTDHL SLFGKIETKF FFYWFQNHKA 60 REKKKLKKKL LMQMNQQQQM SMNNDLDCSN NLPLFTSSAR LMAEVEDAST RLMNSLRNMN 120 PPIPTKCDME TCMMRAQGPH FILMMDIVPN PTSLPCISSN TPLKTLELFP VTSSSSLKDL 180 AKEIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	69	EKKKLKKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766251.1	1e-136	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1U7VMR2	1e-135	A0A1U7VMR2_NICSY; WUSCHEL-related homeobox 3-like
TrEMBL	A0A2S1B7G4	1e-135	A0A2S1B7G4_TOBAC; WOX3d
STRING	XP_009766251.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	9e-26	WOX family protein