PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766400.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 334aa    MW: 38829 Da    PI: 6.8762
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.71.8e-26207256352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl
  XP_009766400.1 207 ARLALEDLAKYFDLPIVEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 256
                     6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151919.224191276IPR003035RWP-RK domain
PfamPF020423.6E-22209256IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQWECASLHS TFLLPNYSFS FLYQNSLFSL SVSVLSLMAS SQNRTLTALV IFQNFLYPVM  60
FRSVHVYRTE GGKEEMEERE YLFHETSNFE ETGFAPVITL HKFDVSAQFV GIENGVWKCM  120
FVYDSGRHQS TSTNASPDWL SFAEDSSGRS STEESGSNNS KSNQPDVKRC VPFLDLNSLP  180
YSDSDIEEND QNVSENKKRR AGTKDIARLA LEDLAKYFDL PIVEASKSLK VGLTVLKKKC  240
REFGIPRWPH RKIKSLDSLI HDLQEEMQRQ QEEDELAAIA VEKRKRMIEY ERESIEKKPF  300
MDIQKETKKF RQDIFKRRYK ARVLENQCRT LPLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766400.10.0PREDICTED: protein RKD5 isoform X2
TrEMBLA0A1U7VWR30.0A0A1U7VWR3_NICSY; protein RKD5 isoform X2
STRINGXP_009766399.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.17e-50RWP-RK domain-containing protein