PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766452.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 832aa    MW: 92073.5 Da    PI: 9.926
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.6e-081357149
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                    +++ GV+ +k  g++ A I+dp     + k+++lg+f ta+eA  a+ a 
  XP_009766452.1 13 TKFAGVHKRK-CGKYGAAIKDPI----KkKKVWLGSFKTAQEASNAYLAK 57
                    6899***999.7*********72....35******************875 PP
2AP234.74.4e-11160204452
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     +G+r+ k +g++ A Irdp    ++ kr++lg+f+t eeA +a+  ++ +
  XP_009766452.1 160 HGIRRQK-NGKYGAVIRDP----ISlKRIWLGTFDTVEEASEAYFSYKSE 204
                     69*9888.8*********8....359******************988766 PP
3AP2353.6e-11251297252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++ GV+ +k +g++ +eI  p     + k+++lg+f taeeA +a+   +++
  XP_009766452.1 251 HIIGVHKNK-WGKYTSEITNPI----TkKKIWLGTFHTAEEASRAYQSKKLE 297
                     789***999.*******99972....36*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-111354No hitNo description
Gene3DG3DSA:3.30.730.105.6E-121455IPR001471AP2/ERF domain
PROSITE profilePS5103212.3911473IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-101460IPR016177DNA-binding domain
SMARTSM003801.9E-51468IPR001471AP2/ERF domain
PROSITE profilePS5103213.274158218IPR001471AP2/ERF domain
SMARTSM003801.4E-4158206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-11160198IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-9160202IPR016177DNA-binding domain
CDDcd000181.33E-12161198No hitNo description
PROSITE profilePS5103214.381251313IPR001471AP2/ERF domain
SMARTSM003802.7E-6251305IPR001471AP2/ERF domain
PfamPF008472.1E-5251294IPR001471AP2/ERF domain
PRINTSPR003679.3E-5252263IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-12252299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-14254298IPR001471AP2/ERF domain
CDDcd000181.06E-12254291No hitNo description
PRINTSPR003679.3E-5274290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.200.201.1E-13452473No hitNo description
Gene3DG3DSA:3.30.200.201.1E-13515607No hitNo description
PROSITE profilePS5001125.39546814IPR000719Protein kinase domain
PfamPF077148.3E-27550808IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
SuperFamilySSF561124.29E-46550810IPR011009Protein kinase-like domain
PROSITE patternPS001070552575IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.108.7E-26608809No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MDSNSTVMDL HATKFAGVHK RKCGKYGAAI KDPIKKKKVW LGSFKTAQEA SNAYLAKQSE  60
FAAQLEPVKA NQDSSKSKSS ASATAQLMQK IPSSLLKPQG SNSTNTTSAA ERSKANGKNP  120
FIREIRKDPF QEKQGTRSSS DGCNSNTVTT SNTKAKISLH GIRRQKNGKY GAVIRDPISL  180
KRIWLGTFDT VEEASEAYFS YKSEFDKLCQ LGNKENKPKD CGQIQHESPV GASSSLDTAS  240
VGRKKRHKTT HIIGVHKNKW GKYTSEITNP ITKKKIWLGT FHTAEEASRA YQSKKLEFQK  300
LVSAKEPQST NKQTHSKQHG KKKLVNGKQS HVNCETFQSG QRIDSCEQSH SISMTRNLLG  360
TSLGTAEEAF HAYHQFKEFD FQCSTKAELQ SNVLTDSSGG EKKQEGQVDE DLWMGQWVQV  420
PGGSEVKFSV KLGLPIIDNY GSLLGYILIG LALVVVILLC IYRKRKQKQK KKELSLETMK  480
KVAAFDHGSD RITITSMDQS KKGASNSGFS SAAVSSDESN TAISQSLVVL TSPEMNNGLK  540
FENLLKAPAE LLGRGKHGSV YKVMCDNPKM TLAVKRIKDW SISGSEFKKR MQKLDQIRHP  600
NVLPAVAFYS SRQEKLLVYE YQNNGSLLQH LHGFQTGQTF HWSSRLSIAA GVADALAFMH  660
QELQHDRIPH GNLKSSNILL NKNMEPCITE YGLMSSAGIS TIQNQAQFPS SSNVFPITDE  720
NAEALFKADI YAFGVIMLEL LTGKVQNNGL NLASWVVSVL REEWTVEVFD RTLIQEGASE  780
ERMVNLLQVA VKCVNHSPEA RPSINQVALM ISTIRDEDDR SIDVSASTST VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5uv4_A1e-3653580714302Putative leucine-rich repeat protein kinase family protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11937KRKCGKYGAAIKDPIKKKK
2464472RKQKQKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316741e-164AC231674.1 Solanum tuberosum chromosome 11 clone RH195J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766452.10.0PREDICTED: uncharacterized protein LOC104217818
TrEMBLA0A1U7VEG00.0A0A1U7VEG0_NICSY; uncharacterized protein LOC104217818
STRINGXP_009766452.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-14ERF family protein