PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766549.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 245aa    MW: 28127.4 Da    PI: 6.8813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-14107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+++m   Rt+ q+ s+ qky
   XP_009766549.1 107 PWTEEEHRRFLMGLDKYGKGDWRNISKKMVISRTPTQVASHAQKY 151
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.07E-111063IPR009057Homeodomain-like
PROSITE profilePS512936.731368IPR017884SANT domain
SMARTSM007171.4E-81466IPR001005SANT/Myb domain
CDDcd001674.73E-71863No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1298156IPR009057Homeodomain-like
PROSITE profilePS5129421.106100156IPR017930Myb domain
SuperFamilySSF466892.01E-16101155IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-18103155IPR006447Myb domain, plants
SMARTSM007174.7E-12104154IPR001005SANT/Myb domain
PfamPF002491.7E-12107151IPR001005SANT/Myb domain
CDDcd001679.87E-10107151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
METIFPTSSS WMNKSSIWTK EENKLFESAI AIYDENTPNR WFQVADMIPG KSVLDVMMQY  60
QELAADVCDI EAGLVPNPGY FASSDCGLQT FRKRGRSSDQ ERKKGVPWTE EEHRRFLMGL  120
DKYGKGDWRN ISKKMVISRT PTQVASHAQK YYQRQLSGCK DKRRPSIHDI TTFHFVADDT  180
SQNNINSLSK EKLHKFTTTT DVVKYWNSSS DEHLMDFGSS YGSSIVAYPY ELSSQSWDGH  240
GAIWD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103RKRGRSSDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766549.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016501061.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S4CJ870.0A0A1S4CJ87_TOBAC; transcription factor DIVARICATA-like
TrEMBLA0A1U7VVW50.0A0A1U7VVW5_NICSY; transcription factor DIVARICATA-like
STRINGXP_009766549.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-81MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]