PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766771.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25034.9 Da    PI: 9.5097
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+ KKA+ELSvLCdaeva+iifs++g+ly ++s
  XP_009766771.1  9 KRIENLTSRQVTFSKRRNGLVKKANELSVLCDAEVALIIFSQKGRLYNFAS 59
                    79***********************************************86 PP
2K-box72.51.2e-24841721098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++ +e+l++e a++ k+ie L+ ++R+l+G++L+s+s+ eLq++ ++Le+sl++iR++K +l+ ++ie l+ +e  l eenk+Lr+k 
  XP_009766771.1  84 LQQYMEHLKHETANMAKKIEILEVSKRKLMGQGLGSCSMDELQEIDSKLERSLENIRARKAQLFNDEIESLKARESLLLEENKNLREKC 172
                     467789********************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.483161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002655.49E-39371No hitNo description
SuperFamilySSF554552.75E-32389IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2487172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.24288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRGKVQMKR IENLTSRQVT FSKRRNGLVK KANELSVLCD AEVALIIFSQ KGRLYNFASS  60
NMQKTIERYH ERARETVVDN STELQQYMEH LKHETANMAK KIEILEVSKR KLMGQGLGSC  120
SMDELQEIDS KLERSLENIR ARKAQLFNDE IESLKARESL LLEENKNLRE KCRLMPTPSA  180
PPPPPPTQLK ERGNCSKNTQ NLEVETELFI GLPAMRCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19171171Myocyte-specific enhancer factor 2B
1tqe_Q2e-19171171Myocyte-specific enhancer factor 2B
1tqe_R2e-19171171Myocyte-specific enhancer factor 2B
1tqe_S2e-19171171Myocyte-specific enhancer factor 2B
6c9l_A2e-19171171Myocyte-specific enhancer factor 2B
6c9l_B2e-19171171Myocyte-specific enhancer factor 2B
6c9l_C2e-19171171Myocyte-specific enhancer factor 2B
6c9l_D2e-19171171Myocyte-specific enhancer factor 2B
6c9l_E2e-19171171Myocyte-specific enhancer factor 2B
6c9l_F2e-19171171Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766770.11e-159PREDICTED: MADS-box protein SOC1 isoform X1
SwissprotQ9FIS12e-77AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A1U7VXQ41e-158A0A1U7VXQ4_NICSY; MADS-box protein SOC1 isoform X1
STRINGXP_009766770.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-70AGAMOUS-like 42