PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766851.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 244aa MW: 27322.4 Da PI: 9.2803

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	151	191	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L XP_009766851.1 151 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYMKFL 191 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.894	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-13	147	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-14	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-14	148	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-6	152	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-6	165	196	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDIDLLKSAA PEDQMEMMLL MQMQDFSKGY SDMNEMPMLD CSPQGSSNIS NNTHANLSQM 60 IDYHNSHTFL NVPASTISFT GSPSVIQHQE TLRNTVGAYP SHTVKRNSMA AMREMIFKIA 120 AMQPIQIDPE SVKPPKRKNV KISNDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM 180 LDEAIHYMKF LKKQVQSLEK VEATRPVAAA SGCLGFPVPM SSLSGNYLPM GSKTYYPYHQ 240 SVQP

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the female reproductive tract development and fertility. {ECO:0000269\|PubMed:17855426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269\|PubMed:17855426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	7e-68	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766851.1	0.0	PREDICTED: transcription factor HEC2-like
Refseq	XP_016456456.1	0.0	PREDICTED: transcription factor HEC2-like
Swissprot	Q9SND4	4e-45	HEC2_ARATH; Transcription factor HEC2
TrEMBL	A0A1S3YVV6	0.0	A0A1S3YVV6_TOBAC; transcription factor HEC2-like
TrEMBL	A0A1U7VPH1	0.0	A0A1U7VPH1_NICSY; transcription factor HEC2-like
STRING	XP_009766851.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA752	23	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	2e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhu L, et al. A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231]