PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766909.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 444aa    MW: 48888.9 Da    PI: 5.6265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13273319455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L+
  XP_009766909.1 273 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 319
                     799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-5227208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.856269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-14272322No hitNo description
SuperFamilySSF474591.31E-17272330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10273318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16273329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEQLMDSSFP MVDSSLSQGD NQLPLGLQHM LQYVIKSQPD WWAYAIFWQS SSDDEGKAFL  60
AWGDGYFQGA KGGAAANNNG SNSSSSEAAQ SERKKVIRGI QALIDGDNNL IDDGDVTDIE  120
WFYVMSLARS FTVDNGSVPG KAFSGGNFVW ITGAAQFQLS SCERAKEAQI HGIQTLLCIP  180
TSNGVLELGS SHLIKENFDL VQQVKSLFLS CPPIQFLEKS ICFADIGLVT GLEQDSEEKL  240
ENQQLDSDKK AVAKKRGRKP KGGDSNINMV ALNHVEAERQ RREKLNHRFY ALRSVVPNVS  300
RMDKASLLSD AVSYINQLKT KVDELESQLI DHSNSNKKQK SNESGENQST NTSVDQELRP  360
NSSSEVEVKI VGPDAMIRVQ SENVNHPSAK LMSALRHLQL QVHHASISSV NNLMLHDVVV  420
KVPLGLRSED GLRTALLTTL ESNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-39272089192Transcription factor MYC3
4rqw_B1e-39272089192Transcription factor MYC3
4rs9_A1e-39272089192Transcription factor MYC3
4yz6_A1e-39272089192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766909.10.0PREDICTED: transcription factor MYC2
RefseqXP_009766910.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A1U7VWY50.0A0A1U7VWY5_NICSY; transcription factor MYC2
STRINGXP_009766909.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-83bHLH family protein