PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767273.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 148aa MW: 16760.3 Da PI: 4.9324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.5	4.8e-18	8	79	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ae ++wyf+s++ + ++r+t +gyW+ g d++++s+ +++++g+kk +fy g + p+g+kt+W+m+eyrl XP_009767273.1 8 MAEGNKWYFYSRATN-------ETRITGNGYWQPVGVDESIMSSsNHKVIGTKKYYAFYMGdEPPQGHKTNWLMQEYRL 79 456789**99755.......5799************9977888******996789**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.807	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-24	3	113	IPR003441	NAC domain
Pfam	PF02365	5.1E-10	13	79	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MVLAGKAMAE GNKWYFYSRA TNETRITGNG YWQPVGVDES IMSSSNHKVI GTKKYYAFYM 60 GDEPPQGHKT NWLMQEYRLS HSSASATRSS SRTSTTHSTN GYYSKWVICR VYESNSDNDE 120 NDSAELSCLD EVFLSLDDLD DDNISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-16	2	116	61	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-16	2	116	61	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-16	2	116	61	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-16	2	116	61	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-16	2	116	64	170	NAC domain-containing protein 19
3swm_B	3e-16	2	116	64	170	NAC domain-containing protein 19
3swm_C	3e-16	2	116	64	170	NAC domain-containing protein 19
3swm_D	3e-16	2	116	64	170	NAC domain-containing protein 19
3swp_A	3e-16	2	116	64	170	NAC domain-containing protein 19
3swp_B	3e-16	2	116	64	170	NAC domain-containing protein 19
3swp_C	3e-16	2	116	64	170	NAC domain-containing protein 19
3swp_D	3e-16	2	116	64	170	NAC domain-containing protein 19
4dul_A	4e-16	2	116	61	167	NAC domain-containing protein 19
4dul_B	4e-16	2	116	61	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767273.1	1e-108	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GWK6	2e-43	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1U7VLN7	1e-107	A0A1U7VLN7_NICSY; NAC transcription factor 25-like
STRING	XP_009767273.1	1e-108	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-33	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]