PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767337.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 229aa    MW: 26044.2 Da    PI: 10.003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM912.1e-28201621128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdk 90 
                     lp GfrF+Ptdeel+ +yL +k+ + +l++  +i+e+ d++++ P+dLp+     +++ yfFsk++   ++ k  +r ++    sgyWka g+ +
  XP_009767337.1  20 LPIGFRFRPTDEELLIHYLSRKIFSMPLPA-LIIPEIlDVFDSFPSDLPA--GDLREKRYFFSKANGDINS-KGCSRLISgkdcSGYWKAVGQGQ 110
                     699**************************9.5688888***********3..3345678****99987754.4445532224569********** PP

             NAM  91 evlsk...........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                      +++            +  +      g+kk+L fy+ ++++  +t+W+mh+y+l
  XP_009767337.1 111 LIVVPisgsattgishQ--QqqrllLGMKKVLRFYQTTRSDCLRTRWIMHQYSL 162
                     **999887777776641..145677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3414188IPR003441NAC domain
PROSITE profilePS5100533.89220188IPR003441NAC domain
PfamPF023652.1E-1921162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEQKECAKP TEGAVGSLNL PIGFRFRPTD EELLIHYLSR KIFSMPLPAL IIPEILDVFD  60
SFPSDLPAGD LREKRYFFSK ANGDINSKGC SRLISGKDCS GYWKAVGQGQ LIVVPISGSA  120
TTGISHQQQQ RLLLGMKKVL RFYQTTRSDC LRTRWIMHQY SLVTISPSDQ NVNMMQVGDW  180
SVFRVYQKKL LISKNLRTKS NGFAEQCNIK TNTRKRPLNE VLKEKEVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-21141899169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767337.11e-172PREDICTED: NAC domain-containing protein 68-like isoform X1
RefseqXP_016459881.11e-172PREDICTED: NAC domain-containing protein 41-like isoform X1
TrEMBLA0A1S3Z6631e-170A0A1S3Z663_TOBAC; NAC domain-containing protein 41-like isoform X1
TrEMBLA0A1U7VGX71e-170A0A1U7VGX7_NICSY; NAC domain-containing protein 68-like isoform X1
STRINGXP_009767337.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.11e-31NAC domain containing protein 41