PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767818.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28456.5 Da    PI: 9.5757
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-1890144256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+++ ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  XP_009767818.1  90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 144
                     678899***********************************************98 PP
2HD-ZIP_I/II115.92.3e-3790178189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr+
  XP_009767818.1  90 RKKLRLTKEQSTLLEESFKRHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCQNLNDENSRLKKELQELRS 178
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1872147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-1877145IPR009057Homeodomain-like
PROSITE profilePS5007117.0786146IPR001356Homeobox domain
SMARTSM003893.0E-1588150IPR001356Homeobox domain
PfamPF000466.6E-1690144IPR001356Homeobox domain
CDDcd000867.05E-1390147No hitNo description
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PfamPF021832.1E-9146178IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.4E-17146189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGNDNETCDT RLTLGLVTSD LLPKQNQLEE HKKIICLDPS IPLHSSDMEE KKTEGSTSKN  60
CKNDLRQAPN STSPRNFNNF DNESKKNGMR KKLRLTKEQS TLLEESFKRH TTLAMGQKQE  120
LAAKLKLKPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCQ NLNDENSRLK KELQELRSIK  180
IDQWASPFHL RLPKIRTIAL CPSCQKTENI KSEQKHCDLD CGNQKVASDA MSKEANSDTI  240
LVKEKNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARTKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767818.10.0PREDICTED: homeobox-leucine zipper protein HAT9-like
TrEMBLA0A1U7VN601e-179A0A1U7VN60_NICSY; homeobox-leucine zipper protein HAT9-like
STRINGXP_009767818.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-46HD-ZIP family protein