PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767942.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 563aa MW: 62467.2 Da PI: 6.6656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.3	8.6e-22	466	541	25	100
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ +++a v k++ +++++++l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i +lq+q++ l+ +la++++e XP_009767942.1 466 DELERLAKVSKFYDRAELQEFLQKLPEHQRGDAVSSMVYEANARVRDPVYGCVGAIASLQNQVSLLQMQLAVAQAE 541 5678999****************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.931	439	542	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-21	464	539	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MSPDISRYSV ADFPQHGSAL IAGLGNYLAV PVFEPLSNER AGVLEIIGDK KGSFSQDFVQ 60 MVYEMLNKVD LRSSNIYGHP DKKQGLRGLE RALKEIEEQL SFICRTHQLP LAQTWLPILD 120 GSSIKRFMTT KEQFCICTSA GYEFRAACDM FHLGKSQGVV SKAFLTRSSC FCSDITQLSM 180 IEYPLAHVAH RVGLHSSFAM CLQSSYTGDY VYLLEFFLPQ DNKSDCRSPQ TILNMLLASM 240 ERQFRSFKLA SGQKLGEKLS VEIIPVPSDD GLNSFEICHG VKPLSDIEAV ARPGKIEWFD 300 PLNRLLKSGN TVHICPENID LTTSSRTANT TTKLTNVRVL TNRVVSNSSE EESMMKISEG 360 HHRINRVVLQ QSVGAKVNGT ETTLASQSAP NSLGTKHLEI NDMNCSSYQL QSAKVADRHC 420 EESSGGETTT SLTHAAKPAT QAVGVQNEST VPRKCPKFLL SGVRGDELER LAKVSKFYDR 480 AELQEFLQKL PEHQRGDAVS SMVYEANARV RDPVYGCVGA IASLQNQVSL LQMQLAVAQA 540 EVVCMQMTMD MEEPQKLWEP LWS

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MSPDISRYSV ADFPQHGSAL IAGLGNYLAV PVFEPLSNER AGVLEIIGDK KGSFSQDFVQ  60
MVYEMLNKVD LRSSNIYGHP DKKQGLRGLE RALKEIEEQL SFICRTHQLP LAQTWLPILD  120
GSSIKRFMTT KEQFCICTSA GYEFRAACDM FHLGKSQGVV SKAFLTRSSC FCSDITQLSM  180
IEYPLAHVAH RVGLHSSFAM CLQSSYTGDY VYLLEFFLPQ DNKSDCRSPQ TILNMLLASM  240
ERQFRSFKLA SGQKLGEKLS VEIIPVPSDD GLNSFEICHG VKPLSDIEAV ARPGKIEWFD  300
PLNRLLKSGN TVHICPENID LTTSSRTANT TTKLTNVRVL TNRVVSNSSE EESMMKISEG  360
HHRINRVVLQ QSVGAKVNGT ETTLASQSAP NSLGTKHLEI NDMNCSSYQL QSAKVADRHC  420
EESSGGETTT SLTHAAKPAT QAVGVQNEST VPRKCPKFLL SGVRGDELER LAKVSKFYDR  480
AELQEFLQKL PEHQRGDAVS SMVYEANARV RDPVYGCVGA IASLQNQVSL LQMQLAVAQA  540
EVVCMQMTMD MEEPQKLWEP LWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	466	543	35	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	466	543	35	112	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	2e-42	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767942.1	0.0	PREDICTED: protein NLP6-like isoform X5
TrEMBL	A0A1U7VIQ1	0.0	A0A1U7VIQ1_NICSY; protein NLP6-like isoform X5
STRING	XP_009767935.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	9e-47	NIN like protein 7