PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767943.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 593aa MW: 67264.8 Da PI: 7.6454

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	44.8	2.4e-14	536	579	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA Lgv+ ++LKriCR yGI RWP XP_009767943.1 536 HNINLKKIEDRSSMTQDAAADGLGVGKSTLKRICRLYGITRWPP 579 79*****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.707	522	593	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-11	537	580	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQYW ASIVIDAQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE 120 NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL 180 ELVTIHQTKE WICGNSVLPI FKMLQVVDLK SPDSYCPLDL KVLDDRQCAL GGLYKAIEVV 240 CQKHQFLFAQ IWVSVADSWC TGKVITVRQR HIAINDNQNL NLFKYASGLQ YILEGYGVVG 300 RAFSSKSSCF CRDVTRLSIM EYPLVTCARE AGLTGCFAIC LSAPGNDDNV FILEFFLPPN 360 ELLRRNLQDF LKLVLGTVKQ QLQHVKVAVG HDFGEMLPVE VIKISSDDEL DSFDICQTTK 420 ELQNAEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAERDSIAVS EEQCNSAGSS 480 TSAKTSQNKE RKLQLDLSTR QAKQGANAGN KRKKGKRIFT SESEIQKERE RIEQDHNINL 540 KKIEDRSSMT QDAAADGLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRK

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MECVFSEQAW SRQPNGLWVF WSERDDAEQL QNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQYW ASIVIDAQTF LTTSDQPFGL TRLEYGLCSY RKKCLSHAIP VELKNGTQCE  120
NDLGPPGRVF KHRLPELCTN MKNYSKQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL  180
ELVTIHQTKE WICGNSVLPI FKMLQVVDLK SPDSYCPLDL KVLDDRQCAL GGLYKAIEVV  240
CQKHQFLFAQ IWVSVADSWC TGKVITVRQR HIAINDNQNL NLFKYASGLQ YILEGYGVVG  300
RAFSSKSSCF CRDVTRLSIM EYPLVTCARE AGLTGCFAIC LSAPGNDDNV FILEFFLPPN  360
ELLRRNLQDF LKLVLGTVKQ QLQHVKVAVG HDFGEMLPVE VIKISSDDEL DSFDICQTTK  420
ELQNAEPLPN GGELMLLDTP NQQSFSSETN QQLSLDIDEI NAERDSIAVS EEQCNSAGSS  480
TSAKTSQNKE RKLQLDLSTR QAKQGANAGN KRKKGKRIFT SESEIQKERE RIEQDHNINL  540
KKIEDRSSMT QDAAADGLGV GKSTLKRICR LYGITRWPPK NKEKKRKCSH SRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	578	586	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767943.1	0.0	PREDICTED: protein NLP3-like isoform X1
TrEMBL	A0A1U7VNH5	0.0	A0A1U7VNH5_NICSY; protein NLP3-like isoform X1
STRING	XP_009767945.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-56	Nin-like family protein