PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009767955.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 289aa MW: 32360.1 Da PI: 8.9661

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009767955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+s+ntkfCyynnyslsqPr+fCk+C+ryWt+GG++rnvPvGgg+rknkk + XP_009767955.1 38 QQQPLKCPRCNSSNTKFCYYNNYSLSQPRHFCKGCKRYWTRGGTIRNVPVGGGCRKNKKIK 98 57899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	36	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MLVIDSEKMA QISSTTNEIW PQQNNESRYM EKSISQDQQQ PLKCPRCNSS NTKFCYYNNY 60 SLSQPRHFCK GCKRYWTRGG TIRNVPVGGG CRKNKKIKKP NATTTNLSHN FHQPQIIDDL 120 SPITSTHHSN PLFYGLPTNP SDLNTQFPRL FNFRVSNTDQ NLGLGFSSGQ IQDVMTTTNS 180 ISHISSYPIF GSSLISSSNS NLASLIASSL QQQNFKSNNN KFQDLSPYTG EGGNVMLKEV 240 KMEGESQKRL DWNISNNQIQ QINSADPSLT WAGTYVDPSN IESSVPALI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX022891	1e-48	JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767955.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U7W121	0.0	A0A1U7W121_NICSY; dof zinc finger protein DOF1.4-like
STRING	XP_009767955.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-37	Dof family protein