PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767961.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 690aa    MW: 76085.8 Da    PI: 5.2107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06188207525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C ff+r G+C  G++C+F H
  XP_009767961.1 188 RCEFFSR-GWCIKGNSCRFLH 207
                     5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.291183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5184207IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
EEIEVEEEEE VEEEEEEEAE EEEKGEGSIP LNVDHKKDGS QVLEPLGLEQ HLRSGISTQQ  60
EPVANLPPQI PLIEGSNDGC RISNSDEARE RKGGERTHIE SDVQASGFED GETNRKRIQP  120
FGQAVDAEIL TDVSGKVAIG VQFTEGGDQE AVDDLKQTSP RLEVLKTRER SSSPAADSRG  180
GSKRLAMRCE FFSRGWCIKG NSCRFLHIKD HVTSYDKDVI LDEAMIKGKL ANGKGLEENG  240
KRSVLDGSSD SVPSAVQSGE NIQLRSDEES HMLMDGPSSI PEVRRESLGC KPYLAGYSTS  300
SSPLLKDGSV HKNSLHGGKR SSVLLSDSYQ NTVVSSYASG LNNVNYKRSR SVHDNHGLQV  360
LNDSADRLSH RCSSSRNIDA LDDQKLLDSS QEYSSSKSTS LQQKSSAFPS SEAELSRVEL  420
SRDTRQSSDY KTKVSSDNWE PSVPFRPSSF LSQIIGCPES LYDPLRDSIE QSNVGDGPSK  480
FSSSGKGGPV FTKCTQENDD PVSPGTLGPE QSSNKHPISG HVYHRDILPD NLSEKELSNN  540
EADTADTAVA HQEHVNTSSK ADKLNLSTEL LHTRLRKKTK SEFERLGHGN EIDIDWKTDR  600
SVNKESRILK HFHAALVEFI KELLKPTWSE GLMSKDAYKI IVKKTADKVV NSLHPHQVPG  660
TAESIRQYLS VSQPKLAKLI EAYVDKYGKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767961.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like, partial
TrEMBLA0A1U7VSM90.0A0A1U7VSM9_NICSY; protein FRIGIDA-ESSENTIAL 1-like
STRINGXP_009767961.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-29C3H family protein