PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009768432.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 357aa MW: 39557.4 Da PI: 9.7583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009768432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.3e-13	285	330	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq XP_009768432.1 285 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 330 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.269	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-16	281	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-12	283	332	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-14	284	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-13	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	285	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MYGNSPANTK TKEGLVLKKR EELLNMESEY KNSTTTSGLL RFSSAPTSFL ANFSDKVVKN 60 GNYKNGLGSK LNLGSSLGLN NSQLPPPYPR QNSMDKGYKV VSSMEMDHQR QNKLGSNLMR 120 QNSSPAGLFS HLNSQNGCGV GGYRRVNGGN GDTVSPSSLG MLSRTNEVEN ESSSITTSLD 180 DDKSGNGNSE TQYYNSGLPF ASWSEASHFQ ESFTGHKREM LDSEEKLFAN SQIGQLGNQP 240 PILSHHLSLP KTPAEIAAME KLFQLQETVP CKVRAKRGFA THPRSIAERV RRTRISERMR 300 KLQELVPNMD KQTNTADMLD LAVDYIKDLQ KQYKTLTDCR ANCKCAAMQK PVSNQRV

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MYGNSPANTK TKEGLVLKKR EELLNMESEY KNSTTTSGLL RFSSAPTSFL ANFSDKVVKN  60
GNYKNGLGSK LNLGSSLGLN NSQLPPPYPR QNSMDKGYKV VSSMEMDHQR QNKLGSNLMR  120
QNSSPAGLFS HLNSQNGCGV GGYRRVNGGN GDTVSPSSLG MLSRTNEVEN ESSSITTSLD  180
DDKSGNGNSE TQYYNSGLPF ASWSEASHFQ ESFTGHKREM LDSEEKLFAN SQIGQLGNQP  240
PILSHHLSLP KTPAEIAAME KLFQLQETVP CKVRAKRGFA THPRSIAERV RRTRISERMR  300
KLQELVPNMD KQTNTADMLD LAVDYIKDLQ KQYKTLTDCR ANCKCAAMQK PVSNQRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00308	DAP	Transfer from AT2G42280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768432.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	1e-78	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1U7VK70	0.0	A0A1U7VK70_NICSY; transcription factor bHLH130-like
STRING	XP_009768432.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5194	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-73	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]