PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768464.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 453aa    MW: 51149.9 Da    PI: 5.8253
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.56.6e-22127223185
        trihelix   1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt++ v++Li+++  ++++ + +g           +kk++W+ vs+ m+  g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d
  XP_009768464.1 127 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgcvQKKGKWKTVSRIMMTNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPALMD 221
                     7**************777777632223455566788**********************************************5689999888888 PP

        trihelix  84 ql 85 
                     ++
  XP_009768464.1 222 SM 223
                     77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-19125250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNSSGMGGGF LSGYNGGFLG MNRLQQPQSN SNNPAHGHQT NHNNVQSLMS TKLGLENDKQ  60
IGLMDVKSCM PFGKDKAVGP SNVVNSSNIN HNNNTSDEDE PSFTEDGNGD NNGGALGKKG  120
SPWQRMKWTD NVVRLLIQVV ACVGDDGSLE GTEGLKRKSG CVQKKGKWKT VSRIMMTNGC  180
HVSPQQCEDK FNDLNKRYKK LNDILGRGTS CAVVENPALM DSMPQLSAKA KDTVKKILNS  240
KHLFYREMCA YHNGQKIPDC NDLEFPVHSS PVAAQCAKDN NGSQGDEAEE NNESDDDDDE  300
SDDEEDNHGV DERMRRVEEN GNFLPHTSGN DNFIAEINEF FQDPTKSRWE QKMWIKKRML  360
QLEEEKIGIQ AEALELEKRQ FKWQRFCRKK DRELEIERLE NEKLILENEH MSLQLKRKEL  420
EIDSKKPNIS FNSAPLSIDR PRGRDQIDAA RYH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127920.0AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768464.10.0PREDICTED: uncharacterized protein LOC104219473
TrEMBLA0A1U7W1F40.0A0A1U7W1F4_NICSY; uncharacterized protein LOC104219473
STRINGXP_009768464.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.14e-73