PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769090.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 461aa    MW: 51077.2 Da    PI: 6.657
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17149198155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009769090.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.36E-12149208No hitNo description
PfamPF008472.1E-9149198IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16149207IPR016177DNA-binding domain
SMARTSM003801.3E-30150212IPR001471AP2/ERF domain
PROSITE profilePS5103217.82150206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-17150206IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-6241286IPR016177DNA-binding domain
CDDcd000187.36E-12241286No hitNo description
SMARTSM003806.9E-12242290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MFDLNLGFEE FAMDDDTVHV SYDTATSEKL RELQLENSGT SNSSIVNVET SSTAGDDEFF  60
SCSDDRRRND GFAFDILRGN DYEESEFVTK ELFPLTGGES SSAAELLSPQ QWLDLSANYG  120
GPAEQRIVVV PQQRQQVKKS RRGPRSKSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGLD ADINFNVADY HDDLKQMSNF TKEEFVHILR RQSTGFSRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKAYDKA AIKCSGKEAV TNFELSTYEG ELSTQDDGGA  300
SHNLDLNLGI ASSSLADEQH GNTCQMVNSE FLLASNGLTE YKGAMHSPST TMGSKLPHRR  360
QPLTDRPLLW NGVNTSVFPT FKGTAIGKGM EVDSSPNWAR QDQHPYGGSP SVPLFSTAAS  420
SGFANSTSAA AHQHHFSTGS LPYHHSPSLA NMNFAHYYCR S
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769090.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK033e-95RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U7W4930.0A0A1U7W493_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009769089.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-92related to AP2.7