PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769341.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 330aa    MW: 38350.6 Da    PI: 7.7689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-171197195
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk + p++  +s+ l +p  f+ e+ +gk   +k ++l+d+ g++W + +   kk++  ++++GW +F ++n L+ gDf++F +dg+  f   +k
  XP_009769341.1 11 FFKLFYPEN--SSQKLKIPTAFT-EYkNGK--LPKRVSLRDRFGNVWPIGM--AKKGRYLYFQDGWVKFIEDNSLEFGDFLIFDYDGNGVF--DFK 97
                    777775544..44559******9.563555..8889***************..9**999***************************98777..444 PP
2B333.29.3e-112333111090
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     + ++++l++p + +++++++   + ++ ++d++gr++e +++++k + r++l+kGW++ ++ n ++  D ++ ++++  s++
  XP_009769341.1 233 AKRRDQLYVPVDVVRDYNLE--LPPKMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNLVEKEDRCICEFMRGkSNE 311
                     567899***********776..6679***************999985.89*********************99988763443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-207103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1139102IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-2110104IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-151194IPR003340B3 DNA binding domain
SMARTSM010199.0E-1611102IPR003340B3 DNA binding domain
CDDcd100176.78E-131199No hitNo description
SuperFamilySSF1019364.51E-16220311IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-16220318IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.305224321IPR003340B3 DNA binding domain
CDDcd100178.08E-7225317No hitNo description
SMARTSM010190.0025227323IPR003340B3 DNA binding domain
PfamPF023627.2E-9234310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDAKKMEKG FFKLFYPENS SQKLKIPTAF TEYKNGKLPK RVSLRDRFGN VWPIGMAKKG  60
RYLYFQDGWV KFIEDNSLEF GDFLIFDYDG NGVFDFKLLG KTACEKKGAG VAVKVEEEEM  120
INIAHQKSEG QKGKKHLASD SSSSSSSFDG DEDEEYMEEE EEDEDEEYEE EEEETKEKAI  180
VICKKKAPCS KGVFKRATTI KKRDVPDQYG AEIFRSGRAT QPKNPYFVAK IRAKRRDQLY  240
VPVDVVRDYN LELPPKMFFR DSEGRKFETE VNIWKDGRIW LKKGWRKICR WNLVEKEDRC  300
ICEFMRGKSN EILYLQVTVV KAGGVSHPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1341044104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769341.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X2
TrEMBLA0A1U7VWL50.0A0A1U7VWL5_NICSY; B3 domain-containing protein REM20-like isoform X2
STRINGXP_009769340.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-17B3 family protein