PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769342.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 516aa    MW: 58908.1 Da    PI: 8.4607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.5e-1339126598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      + ++v   g+l++p +f++ehg +     t++l  ++   W v++  +k +++++l +GW+eF + + +    f++Fk+ ++s f  +v++f+
  XP_009769342.1  39 IVEPSVIDDGQLRMPDPFVQEHGDE--LLETVKLIVPTDDFWCVNV--KKVGKMIWLHDGWREFMEHHSIGCWYFLLFKYGKNSHF--NVHIFD 126
                     56789999**************866..6779***************..********************************998999..999997 PP
2B367.32.2e-21346438196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f ++l+  +v ++++l +p +f++e++ k+     + l+d+ g++W+ ++   +++ + +l++GW +Fv++ngL +gD +vF+l+++ ++ el++
  XP_009769342.1 346 FMQILVEYNVVRNRILNIPANFVREYMPKT--LELIELQDSAGNKWKARC--IRRKMHLFLSEGWFKFVRDNGLLVGDACVFELIKDlKTDELML 436
                     778899999*****************8553..448***************..999999***************************9999888877 PP

                     EE CS
              B3  95 kv 96 
                     kv
  XP_009769342.1 437 KV 438
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1831128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-1833128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.65935128IPR003340B3 DNA binding domain
SMARTSM010195.7E-936128IPR003340B3 DNA binding domain
CDDcd100172.34E-1438126No hitNo description
PfamPF023621.8E-1038126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-25337443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-24339443IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-23344442No hitNo description
SMARTSM010198.9E-20346444IPR003340B3 DNA binding domain
PfamPF023622.0E-19346438IPR003340B3 DNA binding domain
PROSITE profilePS5086315.693346444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MVNALFSANF STGKSSISAN AVRMEPRTYS YSSASFYVIV EPSVIDDGQL RMPDPFVQEH  60
GDELLETVKL IVPTDDFWCV NVKKVGKMIW LHDGWREFME HHSIGCWYFL LFKYGKNSHF  120
NVHIFDLNAT EIDYQCKDHG NAKLGAISQS LSYGKEIICC VGDDKDDESS VEIVDPLETE  180
QGPESSAKSS RAKRCKILPR SKFWHFYDTR SRTNKLHDEG RVLSEKNLNI LGGSNLTKPL  240
VGKLVQQNMD TPIYSAVVTG GVTNQDNAQV GSENDILQLN ESKHKIHLDQ YIQIEPIADT  300
RKSFTGQQWE KSVRRGRPHK RGRAKATETN RAINAAKMFK PENPYFMQIL VEYNVVRNRI  360
LNIPANFVRE YMPKTLELIE LQDSAGNKWK ARCIRRKMHL FLSEGWFKFV RDNGLLVGDA  420
CVFELIKDLK TDELMLKVHI FRSRVEEKST NLQTCSVSEP TLSIGKNCLQ FNESKHTETS  480
DAFGPVSSNR KQLQERYKEI IHRPATGEIC RAGKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1932644229141B3 domain-containing transcription factor VRN1
4i1k_B2e-1932644229141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769342.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1U7VN520.0A0A1U7VN52_NICSY; putative B3 domain-containing protein Os03g0621600
STRINGXP_009769342.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-23B3 family protein