PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009769345.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 113aa MW: 13274.1 Da PI: 7.5107

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009769345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.7e-19	19	108	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 kv +++v + l++p +f++ + ++ + t +l+ +sg+ W++kl r ++ ++ ++GW++F+++++L+egDf++F++dg+ +f +v+ XP_009769345.1 19 YKVIFNPHVEE---LRIPSEFVKYITKE--ATETTILKGPSGKYWNMKL--REDEEGlFFNAGGWNKFAREQQLEEGDFLLFQYDGKITF--HVR 104 56777777776...56****555533..4458999********..888888677789*****************986555..9 PP EE-S CS B3 96 vfrk 99 +f+k XP_009769345.1 105 IFNK 108 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-22	12	109	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-24	13	110	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.974	15	109	IPR003340	B3 DNA binding domain
CDD	cd10017	1.20E-16	16	107	No hit	No description
SMART	SM01019	2.0E-16	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.0E-17	18	108	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVRKSSSSSI PRDDSPCFYK VIFNPHVEEL RIPSEFVKYI TKEATETTIL KGPSGKYWNM 60 KLREDEEGLF FNAGGWNKFA REQQLEEGDF LLFQYDGKIT FHVRIFNKNG LER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769345.1	3e-80	PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBL	A0A1U7W4Z7	8e-79	A0A1U7W4Z7_NICSY; B3 domain-containing protein Os01g0723500-like
STRING	XP_009769345.1	1e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3779	22	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	2e-16	B3 family protein