PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769361.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 299aa    MW: 33846.8 Da    PI: 10.0837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.6e-1574158594
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++++ l+++ l lp +fa+e+++ +++  t++++de   sW++ l    +++++++++ W++F+ angLkegD ++++ +  +++++ +
  XP_009769361.1  74 TIKPYCLSKSFLQLPGPFARENDLRNRK-CTIKIRDE-QMSWTFSL--YSSGSHTFIGGVWSKFCIANGLKEGDQIMLEIVA-NGKNPIL 158
                     56889999999***********988655.59*****5.579*****..88888899***********************876.4444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-1567158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1668158IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-1369148No hitNo description
PROSITE profilePS5086311.15270163IPR003340B3 DNA binding domain
SMARTSM010191.0E-1270164IPR003340B3 DNA binding domain
PfamPF023624.2E-1374159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFEVSIFGS SKCEREYEQP LQGVSEGEEE RDHSCKKITP QEKSKLNIKS SHKAFPNVEA  60
AQDMPLDRPY FIYTIKPYCL SKSFLQLPGP FARENDLRNR KCTIKIRDEQ MSWTFSLYSS  120
GSHTFIGGVW SKFCIANGLK EGDQIMLEIV ANGKNPILKV DDLMGNASLQ PKGKKTNFDT  180
KRVSTEDLRA NASRQREGKK PKLDARRVST RGLVTRANPC FCIKHPIFSF HFSDSNVSSF  240
FSFLVLFIKG ITGLRIKTSD MPATKARVRA LTSANANPHF ISTIRPYFIS RPSLESNLN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769361.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X2
TrEMBLA0A1U7VWN10.0A0A1U7VWN1_NICSY; putative B3 domain-containing protein REM4 isoform X2
STRINGXP_009769360.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-13B3 family protein