PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769362.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 229aa    MW: 25981.6 Da    PI: 9.5827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-1578162594
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++++ l+++ l lp +fa+e+++ +++  t++++de   sW++ l    +++++++++ W++F+ angLkegD ++++ +  +++++ +
  XP_009769362.1  78 TIKPYCLSKSFLQLPGPFARENDLRNRK-CTIKIRDE-QMSWTFSL--YSSGSHTFIGGVWSKFCIANGLKEGDQIMLEIVA-NGKNPIL 162
                     56889999999***********988655.59*****5.579*****..88888899***********************876.4444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1571162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-1672162IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-1373152No hitNo description
SMARTSM010191.0E-1274168IPR003340B3 DNA binding domain
PROSITE profilePS5086311.15274167IPR003340B3 DNA binding domain
PfamPF023622.4E-1378163IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEFEVSIFGS SKCEREYEQP LQGVSEGEEE RDHSCKKITP QVNTTEKSKL NIKSSHKAFP  60
NVEAAQDMPL DRPYFIYTIK PYCLSKSFLQ LPGPFAREND LRNRKCTIKI RDEQMSWTFS  120
LYSSGSHTFI GGVWSKFCIA NGLKEGDQIM LEIVANGKNP ILKVDDLMGN ASLQPKGKKT  180
NFDTKRVSTE DLRANASRQR EGKKPKLDAR RVSTRVSSSG FCKIKWLGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769362.11e-172PREDICTED: B3 domain-containing protein REM2-like isoform X3
TrEMBLA0A1U7VN821e-171A0A1U7VN82_NICSY; B3 domain-containing protein REM2-like isoform X3
STRINGXP_009769360.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.17e-14B3 family protein