PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769431.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 258aa    MW: 28947.3 Da    PI: 6.9024
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.31.9e-292685155
         G2-like  1 kprlrWtpeLHerFveaveqLGGse.....kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt +LH++Fv+av++LGG+e     +AtPk++l+lm+vkgLtl+h+kSHLQkYRl
  XP_009769431.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEsfgftEATPKSVLRLMGVKGLTLYHLKSHLQKYRL 85
                    79********************997444447****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-292386IPR009057Homeodomain-like
SuperFamilySSF466893.4E-142688IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-202686IPR006447Myb domain, plants
PfamPF002491.5E-72884IPR001005SANT/Myb domain
PfamPF143791.6E-12132164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYNGSGAGRG GSFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE SFGFTEATPK  60
SVLRLMGVKG LTLYHLKSHL QKYRLGQQAK KQNAAEQNKE NSSGDSSGQF NLHSSGPGTS  120
SLSMNYIQGD VPIAEAVMSQ IEVQKRLQDQ LEVQQKLQMR IEAQVEATRA QLTDLDLPLS  180
NLMNYTNRQN RNDNIIGKTT HDDNIKEELQ RSNYIVEEEQ KSNMNLNFDL NSRNSYDFVG  240
ANAAVLEAKA LSHGRLET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-172684154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-172684154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-172684154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-172684154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-34HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-34HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769431.10.0PREDICTED: myb family transcription factor APL isoform X3
SwissprotC0SVS42e-58PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A1U7VWU60.0A0A1U7VWU6_NICSY; myb family transcription factor APL isoform X3
STRINGXP_009769428.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-52G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]