PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009769503.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 406aa    MW: 44472.2 Da    PI: 8.6467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009769503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34.1e-114267227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_009769503.1 42 GESDCSYYIRTGLCRFGSTCQFNHPP 67
                    5789********************97 PP
2zf-CCCH30.85.1e-107291827
                    GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                    ++++tGtCk+G++CkF+H++
  XP_009769503.1 72 YYLKTGTCKFGATCKFHHPR 91
                    8*****************96 PP
3zf-CCCH34.33.9e-11114137427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C +++rt +Ck+G++CkF+H++
  XP_009769503.1 114 NECTYYMRTAQCKFGSTCKFHHPE 137
                     68********************96 PP
4zf-CCCH36.77e-12268292327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009769503.1 268 QPECQFYMKTGDCKFGAVCRFHHPR 292
                     799********************96 PP
5zf-CCCH36.21e-11314338327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C f++r+G+Ck+G++CkF H++
  XP_009769503.1 314 EPMCIFYSRYGICKFGPSCKFDHPM 338
                     689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.454068IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-74267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-54468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003560.0326891IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-87291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4937292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-47291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6111138IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4116136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911265293IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5265292IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8268292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6268295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5271295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295311339IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4311338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5314338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4316336IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDISVSEGPP SLSPSLRQDS LWQMNLRSME SMESGPYPVR EGESDCSYYI RTGLCRFGST  60
CQFNHPPNRK LYYLKTGTCK FGATCKFHHP RDKAGIAGRV TLNVLGYPLR PNENECTYYM  120
RTAQCKFGST CKFHHPEPSN MMVSSRGSPV YPPGPSSTTP GQMSYPLSRA SFISGARWQG  180
SSSYAPLPVL QGVVSFPGFT YNGQLGSVSS AEGQQQTAGN SQVYGSSRSS DKATMGSEGM  240
NSSYRVSSLP VGYYALQGEN VFPERVGQPE CQFYMKTGDC KFGAVCRFHH PRERLLPPPD  300
CLLSPIGLPL RAGEPMCIFY SRYGICKFGP SCKFDHPMRV FTYNISASSS TDDPSVRRLL  360
GSSSGTGALT LTSEGIVEAA STTPRRLSLL ETRKMPPGDN NFDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769503.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7VT240.0A0A1U7VT24_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X2
STRINGXP_009769498.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-152zinc finger protein 1