PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770283.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 505aa    MW: 55360.2 Da    PI: 6.7902
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770283.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15122181155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_009770283.1 122 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 181
                     57*******************666664477446*************************98 PP
2AP247.35.2e-15224275155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009770283.1 224 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 275
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.68E-22122191No hitNo description
PfamPF008472.8E-12122181IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17122190IPR016177DNA-binding domain
PROSITE profilePS5103219.23123189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-16123190IPR001471AP2/ERF domain
SMARTSM003806.0E-30123195IPR001471AP2/ERF domain
PRINTSPR003672.6E-6124135IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18224285IPR016177DNA-binding domain
CDDcd000183.68E-25224285No hitNo description
PfamPF008476.5E-10224275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18225283IPR001471AP2/ERF domain
PROSITE profilePS5103219.045225283IPR001471AP2/ERF domain
SMARTSM003807.9E-34225289IPR001471AP2/ERF domain
PRINTSPR003672.6E-6265285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGLTHQPLGF LLQLINKYGC DFVRIGGVEE NGKGADGPPK LEDFLGGTSS ITAAATEVCW  60
ENPATTTTTT SLCEYGSELK TIAASFLRSF SADQNNSQNK QLAVVALPPA KKAVETFGQR  120
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW  180
GPTTTTNFPV LNYEKELEEM KSMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA  240
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASSNLPVG  300
GMNNISKTSS ESASESSKNV EGNRSDDRDR DISSATSAPF SSQAPNMVNL GFGLPIKQDV  360
SDFWSILGYT NDQNNGSKNP SANATFCHGP PDGTTIQTQG TTIISMDLPA TTTSLNEVNN  420
SRVIFNEEGY YHQQQEQEQE QQSGSCSTIT SVPSDISMAL NSNATTTTTL DGSNFGNWMP  480
PSLHSFQTTA KNNLAPFQTP IFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770283.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X3
SwissprotQ6PQQ31e-146AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U7VV790.0A0A1U7VV79_NICSY; AP2-like ethylene-responsive transcription factor AIL5 isoform X3
STRINGXP_009770281.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]