PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770460.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 226aa    MW: 26236.6 Da    PI: 9.4093
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.72.2e-349104195
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ ++l+  k++ 
  XP_009770460.1   9 ACASCKHQRKKCTEKCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDHdRRKAVESLIWEAFCRQKDPVFGPYGEYKRIFEELKLYKTQY 103
                     7************************************************66555******************************99999998876 PP

          DUF260  95 a 95 
                     +
  XP_009770460.1 104 Q 104
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1598110IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-339105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQKPSGTAAC ASCKHQRKKC TEKCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED  60
HDRRKAVESL IWEAFCRQKD PVFGPYGEYK RIFEELKLYK TQYQQILQMP ISQGSNNNGM  120
VYEATAQGLI NGWSINKRNE NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENN  180
NGSIVIVPQP QAYNEFNQQY FLAGQYNPID SKSRESMLWE DHSRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-22487688LOB family transfactor Ramosa2.1
5ly0_B1e-22487688LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770460.11e-170PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1U7W8841e-169A0A1U7W884_NICSY; LOB domain-containing protein 2-like
STRINGXP_009770460.11e-170(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-43LOB domain-containing protein 2