PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770482.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 433aa    MW: 50085.3 Da    PI: 9.3185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-121594898
                    -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +k+g l +p  f+ ++  g++   +++  +  + +++W+vk+  ++++    ++ GW +F+++++L+ gD ++F+++g++ f   v +f+
  XP_009770482.1 15 QPGFKNG-LKIPTGFL-KYlkGYD---HIEHAILRRGSKQWRVKV--NGCR----FEVGWADFAQQHDLQLGDLLIFRHEGNMVF--EVIIFD 94
                    4455665.********.6655444...567788899*********..7777....999*********************999999..777776 PP
2B351.51.9e-16144226488
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      +++s++l++g +++p +fa+++g++ ++  +l+++de+ rsW++kl    + +++++++ W +F  an+Lk+gD + F+++ + +
  XP_009770482.1 144 CTVRSYYLTNGYMRVPSRFASKNGLIYKK-CDLIIRDERQRSWNLKL--YTSCDHVYIGGRWAKFHAANDLKVGDRIKFEVVTNgE 226
                     5678*******************998655.59***************..99999**************************876523 PP
3B343.17.3e-14332418595
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     +++++ l+ + l+lp +fa ++g+++ ++ +l+++de+ rsW++ l  r  + ++ +++GW++  + + LkegD ++F+++  +++++v k
  XP_009770482.1 332 TIRPYCLTYSYLILPTQFALTNGLIN-KKYDLIIRDEWQRSWNLML--RPFGTSVCIRGGWSKLRDTHCLKEGDQIMFEVVT-DGTKPVWK 418
                     56788999999***********9995.668****************..*******************************876.56656655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-19498IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-19498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138796IPR003340B3 DNA binding domain
CDDcd100174.43E-13894No hitNo description
SMARTSM010191.3E-121096IPR003340B3 DNA binding domain
PfamPF023624.7E-91894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16139232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17140235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.406141235IPR003340B3 DNA binding domain
SMARTSM010191.7E-8142236IPR003340B3 DNA binding domain
PfamPF023621.1E-14145227IPR003340B3 DNA binding domain
CDDcd100171.44E-13147236No hitNo description
Gene3DG3DSA:2.40.330.102.5E-14325419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16327420IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743328422IPR003340B3 DNA binding domain
SMARTSM010198.9E-12329423IPR003340B3 DNA binding domain
PfamPF023628.1E-12332418IPR003340B3 DNA binding domain
CDDcd100176.80E-11343416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MRVPPKKPHF FKPIQPGFKN GLKIPTGFLK YLKGYDHIEH AILRRGSKQW RVKVNGCRFE  60
VGWADFAQQH DLQLGDLLIF RHEGNMVFEV IIFDSSHCDR EYAEYLLQEE DIVEEACKKF  120
KFKDGFPLAE AATHNPFGQS HFECTVRSYY LTNGYMRVPS RFASKNGLIY KKCDLIIRDE  180
RQRSWNLKLY TSCDHVYIGG RWAKFHAAND LKVGDRIKFE VVTNGERPIW KFHVKRNPSI  240
KSSSKAFPYA EAATHKPFGP SHLDSGHCNR EYAEYLQEKE EEKEEAAGDA VEGTSKKFKL  300
KEEPNPSVKS SSKAFPHVEA AIHKPFGHFV CTIRPYCLTY SYLILPTQFA LTNGLINKKY  360
DLIIRDEWQR SWNLMLRPFG TSVCIRGGWS KLRDTHCLKE GDQIMFEVVT DGTKPVWKFH  420
GKISGECKNQ SRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770482.10.0PREDICTED: B3 domain-containing protein REM5-like isoform X2
TrEMBLA0A1U7VRH10.0A0A1U7VRH1_NICSY; B3 domain-containing protein REM5-like isoform X2
STRINGXP_009770481.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-39B3 family protein