PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770784.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 219aa    MW: 24240.2 Da    PI: 8.4927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-203078355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAaka++ a++ l+g
  XP_009770784.1 30 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAAKAYDTAARTLRG 78
                    8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-302986No hitNo description
PfamPF008471.1E-122978IPR001471AP2/ERF domain
PROSITE profilePS5103223.1432986IPR001471AP2/ERF domain
SMARTSM003801.9E-372992IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-313086IPR001471AP2/ERF domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRRGRATPAA KQAAEVPPAA GSGGLKEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEEAAKAYD TAARTLRGPK AKTNFPLLPY SHFNQTVNPN DPFIDPRLYS QENHPIVIQR  120
PTSSSMSSTV ESFSGPRPPP RQQTAVLPSR KHPRSPPVVP DDCRSDCDSS SSVVEDGDCD  180
NENDNIVSSV FRKPLPFDLN FPPPMDADSD DLHCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-202486972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6690860.0AB669086.1 Nicotiana tabacum NtERF#229 mRNA for ethylene response factor #229, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770784.11e-160PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_016484344.11e-160PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS86e-75ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1S4B6521e-159A0A1S4B652_TOBAC; ethylene-responsive transcription factor 3-like
TrEMBLA0A1U7W7Z71e-159A0A1U7W7Z7_NICSY; ethylene-responsive transcription factor 3-like
STRINGXP_009770784.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-34ethylene responsive element binding factor 3