PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009770806.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 160aa    MW: 18473.7 Da    PI: 6.6647
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009770806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.22.7e-0936072128
             NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                     +r +r+ ++g+Wk +    +++++kg++ g ++ + f + r+++ge + +W+m+ey++
  XP_009770806.1   3 TRVRRTCANGTWKGQTGIDPIKNAKGTVAGFRRCFKFQTSRSKEGEhNKNWLMKEYSV 60 
                     7899999******8888899***9**************999999874789******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.67183IPR003441NAC domain
SuperFamilySSF1019417.85E-14382IPR003441NAC domain
PfamPF023651.5E-5660IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
EHTRVRRTCA NGTWKGQTGI DPIKNAKGTV AGFRRCFKFQ TSRSKEGEHN KNWLMKEYSV  60
GNDFFRENNI PKEDIVVCRI KKNIRSKKNH GVNMEEQDVP KAIEAMLHGP DEDYCTTVQP  120
ATICQAADQH QVNDWSNYQQ EVNWADDMLI GIDEFGDIIW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770806.11e-119PREDICTED: NAC domain-containing protein 55-like, partial
TrEMBLA0A1U7W0T11e-117A0A1U7W0T1_NICSY; NAC domain-containing protein 55-like
TrEMBLB3VK721e-116B3VK72_TOBAC; NAC transcription factor
STRINGXP_009770806.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-07NAC domain containing protein 46