PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009770986.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 237aa MW: 26400.6 Da PI: 10.2669

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009770986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	84.7	1.4e-26	72	126	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR+ Rak e e+kl k rkp+lh SRh hA+rRpRg gGrF XP_009770986.1 72 GPIFVNAKQYHGILRRRKFRAK-EMENKL-LKPRKPFLHLSRHLHAMRRPRGGGGRF 126 69*****************9.566999.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-29	69	129	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	30.989	70	129	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.5E-23	73	126	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.7E-20	73	95	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.7E-20	103	126	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
SQSGDSKSSE KLSNVVDGVS MKSSNTDYQG HFEPLIYAKY PYGEKSLGLF STYGSQVSGR 60 VMLPLNLTSD EGPIFVNAKQ YHGILRRRKF RAKEMENKLL KPRKPFLHLS RHLHAMRRPR 120 GGGGRFLNTR KMNGSTNDGT TKTSNRKSQP TGSQNSEVLQ SDHIGNFNSP KETTSRMSCN 180 SSEVTSFYSR GDLDTYPVHN PRPSVQAFFY MMNTGHDILM GSKWGSAAAD SCCNLNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	3e-15	71	129	2	62	HAPB protein
4g92_A	3e-15	71	129	2	62	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016508495.1	1e-178	PREDICTED: nuclear transcription factor Y subunit A-10-like, partial
TrEMBL	A0A1S4D4Z1	1e-177	A0A1S4D4Z1_TOBAC; nuclear transcription factor Y subunit A-10-like
STRING	XP_009770986.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-44	nuclear factor Y, subunit A10