PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771084.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 316aa    MW: 34405.8 Da    PI: 5.3704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16140186455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  XP_009771084.1 140 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 186
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-20133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19133193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-18139190No hitNo description
PfamPF000102.6E-14140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MADPYRTSPH PHASSSPLES EDMSSFFLNF LQNSSASTSA AAAGFYHRSV PETAADSSSN  60
LNFSDPGRFY AAEFKEGVEN VFASAGLGDS DAMDSANRRE FLEDDKVDNL GFSSEECDGL  120
DMPANQNHSR SSKRSRSAEV HNLSEKRRRS RINEKLKALQ TLIPNSNKTD KASMLDEAIE  180
YLKQLQLQVQ MLTLRNGLSL YPGYVPGSLQ SMQLPSGNEF DGRSFMLSAN GGATLPGNRE  240
MQQTAFEISN QNLSGKPTIT SHNAENSLAL ETTIQNHYGL LNHLASSKDI CRGDTLSRLH  300
LDMSCSGNNS SSGVSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-116HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771084.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLA0A1U7W8V10.0A0A1U7W8V1_NICSY; transcription factor SPATULA-like
STRINGXP_009771084.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-37bHLH family protein