PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771160.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 391aa    MW: 44836.5 Da    PI: 5.7626
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.4e-23281364186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev++L+ +r  +++++ +g +k+  Weev++ ++++g+ r+pk+Ckekwen+nk+yk++ ++ k    ++ ++cpyf++l+
  XP_009771160.1 281 RWPKSEVQDLVSIRIALDHKFLKG-AKGSVWEEVADGLAKKGYIRTPKKCKEKWENINKYYKRTIDSGKAC-LRNYRSCPYFRELD 364
                     8**********************9.99*****************************************997.456679*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073274337IPR017877Myb-like domain
CDDcd122032.41E-19280343No hitNo description
PfamPF138374.9E-18280364No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MELLTDGDGH RSNDVTTFPD NNLTPFPVST NAVYSHPASV VPPPPEIDHL PVSPARKLRP  60
VRCGNGRSYV DMVDSSCDMD ETLMNCSSDL GGFFSQFSAQ NVNTVIPREC GFEFSTVQQM  120
KSVFDADCFN LISQARILEA EFSSSSDDSE SSEAIEERLN RKRKRETRKS LKLYLEDMVK  180
RLMDKQEQMH KQLIDMIEKK EHERIIREEG WKQQEIERAK RDEEVRAEET SRNLALISFL  240
ENLLGDEFQI PKSSEMSSRV KDEGEVHGQE ADVRSDPCNR RWPKSEVQDL VSIRIALDHK  300
FLKGAKGSVW EEVADGLAKK GYIRTPKKCK EKWENINKYY KRTIDSGKAC LRNYRSCPYF  360
RELDILYKSH LLSQGTGDCV KSEAESKKAE E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771160.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A1U7WAA50.0A0A1U7WAA5_NICSY; trihelix transcription factor GT-2
STRINGXP_009771160.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.14e-44Trihelix family protein