PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771233.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 777aa    MW: 86809.8 Da    PI: 9.8272
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-09105143547
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 
                     GVr  k +gr+ A I dp    +r ++++lg+f+ta+eA ka+ 
  XP_009771233.1 105 GVRKQK-TGRYGAVITDP----IRhRKVWLGTFDTAQEASKAYL 143
                     9**888.9*********7....357*****************96 PP
2AP232.12.9e-10360405554
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     GVr+ k +gr+ A I dp    +r k++++g+f+t eeA +a+   + ++e
  XP_009771233.1 360 GVRRQK-TGRYGAVITDP----IRhKKVWIGTFDTVEEASQAYFSKKCEFE 405
                     9**888.9*********7....357******************88887776 PP
3AP228.83.1e-09445488552
             AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     GVr+ k +gr+ + I dp+    r k+++lg+f+t eeA k +   + +
  XP_009771233.1 445 GVRRQK-NGRYGVVITDPT----RhKKVWLGTFDTVEEASKVYFSKKSE 488
                     9**888.8*********84....36****************99766655 PP
4AP232.81.8e-10543589252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++ GVr +  +g + +eIr p    ++ kr++lg++ taeeA +a+   +++
  XP_009771233.1 543 HFIGVRKRN-SGNYSSEIRNP----ISkKRIWLGTYSTAEEASQAYQSKKLE 589
                     789***888.7*********7....246*****************9766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.721102160IPR001471AP2/ERF domain
SMARTSM003801.6E-5102164IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-9104149IPR016177DNA-binding domain
CDDcd000184.74E-12105156No hitNo description
Gene3DG3DSA:3.30.730.103.3E-11105147IPR001471AP2/ERF domain
PROSITE profilePS5103212.615357416IPR001471AP2/ERF domain
PfamPF008471.5E-5359406IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-9359403IPR016177DNA-binding domain
CDDcd000185.60E-11360397No hitNo description
Gene3DG3DSA:3.30.730.102.8E-10360399IPR001471AP2/ERF domain
SMARTSM003800.002360417IPR001471AP2/ERF domain
PROSITE profilePS5103212.128442501IPR001471AP2/ERF domain
SMARTSM003800.002442511IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-8444487IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-9445482IPR001471AP2/ERF domain
CDDcd000181.44E-10445482No hitNo description
CDDcd000185.65E-14542583No hitNo description
PROSITE profilePS5103215.119543603IPR001471AP2/ERF domain
PfamPF008471.9E-4543586IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-11543591IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-16543591IPR001471AP2/ERF domain
SMARTSM003802.7E-9543597IPR001471AP2/ERF domain
PROSITE profilePS510328.926668727IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-5671715IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MHEKRPLLGV EWQNMGRYRS ARLRKKCKHS WGTLESVKEA FKGFNSNTHE YEELGMIKQE  60
KESLIHVESS KETSCLTANV HNTKSSDHCN YMVESDPKAR RSLLGVRKQK TGRYGAVITD  120
PIRHRKVWLG TFDTAQEASK AYLVKQCEFA RLAKVNGKRP LSKVQRLKSG RCRSLLRDPI  180
KKKDVFLGNF DTAEDASKVD FSKKGKVEKL VMIKEGSISI TCEESELESS SVATSAVTGN  240
LSLNQTDGIS NERSTSFIKS PLLVVEWQNM GRYYSVSKDP FNKKKILDTL ESVEEPAKGF  300
CSNMQEMEKL VKVKQCKGPV IHEKSSRETT CSMDNVQGTK LSDGCDTVRD NPNARRSLIG  360
VRRQKTGRYG AVITDPIRHK KVWIGTFDTV EEASQAYFSK KCEFEKLNQG KQGNEPKSCE  420
QLQPESSDEC NSVTSNPKAK RSLLGVRRQK NGRYGVVITD PTRHKKVWLG TFDTVEEASK  480
VYFSKKSEFE KLNQGKQGNE PKNCEQFEPE SSSGALSPMA NDQSLNTAGV SRNGGSNSPK  540
TTHFIGVRKR NSGNYSSEIR NPISKKRIWL GTYSTAEEAS QAYQSKKLEF QKLLKAKQQC  600
NKQISSAREK QDGKRKLVNV KLGHETVNHE EFQSESAGGA SSSGIDVPIS NSSNEGSDQG  660
IDFHKISHSM GVQKRKSGKY TSEITNPISM AKMSLGTVSP TEEAFHADQS KKFDFQSSKN  720
VELQSNPTDS SAGEKQAGQE DEDLWMGQWV QLPGDRAVKF SLQLGLPIID NYGSLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755202e-52HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771233.10.0PREDICTED: uncharacterized protein LOC104221795
TrEMBLA0A1U7VXX50.0A0A1U7VXX5_NICSY; uncharacterized protein LOC104221795
STRINGXP_009771233.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-13ERF family protein