PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009771344.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 178aa MW: 20929.1 Da PI: 10.6294

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009771344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	3	62	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+++t++ql +L++l++k +p+ +e + ++++l +++ ++V++WFqN++a+++ XP_009771344.1 3 RTRWKPTPQQLMILQDLYRKgLTNPNSSEVQMITSHLsmygKIQWKNVFYWFQNHKARDR 62 89***************99***********************************99 PP
2	Wus_type_Homeobox	103.6	1.3e-33	2	64	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +rtRW Ptp+Q++iL++ly++Gl +Pn++e+q it++L+ yGki+ kNVfyWFQN+kaR+r+k XP_009771344.1 2 PRTRWKPTPQQLMILQDLYRKGLTNPNSSEVQMITSHLSMYGKIQWKNVFYWFQNHKARDRHK 64 589**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-5	1	68	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.09	1	64	IPR001356	Homeobox domain
CDD	cd00086	0.00188	2	65	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.4E-7	2	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-11	3	64	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-15	3	63	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MPRTRWKPTP QQLMILQDLY RKGLTNPNSS EVQMITSHLS MYGKIQWKNV FYWFQNHKAR 60 DRHKMRKQLL QKYPKDDHRQ LIINNKNPPS PSPSPSSSTT VSQVYSHSPP IFLHQVEATT 120 EVSPQMMNYL WGNRMMRMNG RDWILMTDKG SSNIVHCSNK VPLRTLELFP VETTGFKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771344.1	1e-131	PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBL	A0A1U7W9L6	1e-130	A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like
STRING	XP_009771344.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	6e-34	WOX family protein