PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771778.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 667aa    MW: 77129.8 Da    PI: 6.4056
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.57.9e-2260142290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn YAk  GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  XP_009771778.1  60 FYNCYAKVHGFGVRVSNTWYR-KSRERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKRWRIIEVELEHNHLVS 142
                     9***************99997.66679**************99888.....***********************************775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1960142IPR004330FAR1 DNA binding domain
PfamPF105511.1E-23264358IPR018289MULE transposase domain
PROSITE profilePS509669.47549585IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-4560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDGLSLNAEP IFDDETEEFE IDGECAMTEY VGQSGIIEGE NPVPPAVGME FETYEDVYYF  60
YNCYAKVHGF GVRVSNTWYR KSRERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENKRWRI IEVELEHNHL VSPSTEKFYK SHRNISSGSK RSLQMDANQD IQKIRLFRTV  180
IIDPDDDRKL NIDEGEFRNT IDQTNNHLIL KPGDAQALHS FFTDLQLVNP DFFYVMDLNE  240
KGCLRNVFWA EARFKAAYSY FGDVVRIDTA CLTTKYEVPL VVIAGVNHHG QSVPLGCGLI  300
AGETVESFIW LLRAWLTYMV GRPPQTIIIA QSRAMQTAIA DVLPRSAHCI SLSHIMKKVP  360
EELGGLHEYE VIKKAFTKAI YQSSRIEEFE AAWEDMILHH RIRDHKWLQT LHDDRKHWAP  420
VYLKDTFLAG MVSVTLSERE ASPFDEYLAN HTSLKVFLNS YNQCLKEIYL REALADTESR  480
NSSFMLKSRF YFEMQLSKVY TNHIFEKFQI EVEGMFSCLS TRQVSIDGSV VTYIVKEHEV  540
ENVNEARDYE VTLNTAVAEV LCACGLFNLE GFLCRHALCV LSQNSFEEIP PQYILSRWRK  600
DIHRSYILDY GCNLIDTKNP VHRYDNLYKC AVKLVEEGRK SRERYKFTLE ALGEILNKVS  660
LQDHNTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771778.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A1U7VZI00.0A0A1U7VZI0_NICSY; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_009771778.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6