PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771892.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 205aa    MW: 22693 Da    PI: 7.4176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17117167255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+++AeIrdp   + k  r++lg+f+   +Aa+a++ a+ k++g
  XP_009771892.1 117 NYRGVRRRP-WGKFAAEIRDP---NkKGSRIWLGTFDADVDAARAYDCAAFKMRG 167
                     59*******.**********9...4345**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.19E-31116175No hitNo description
SuperFamilySSF541713.53E-22117177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-31117176IPR001471AP2/ERF domain
PfamPF008476.0E-12117167IPR001471AP2/ERF domain
PROSITE profilePS5103224.078117175IPR001471AP2/ERF domain
SMARTSM003801.5E-36117181IPR001471AP2/ERF domain
PRINTSPR003673.8E-13118129IPR001471AP2/ERF domain
PRINTSPR003673.8E-13157177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTTQEEGLTL ELIRQHLLED FTSTESFINS LNSCFSDQIS PVFTSVKTEP STSNNSLSDS  60
PTSYPNSPIS HFFSDFPEFN TNSDTNLSPT SDGSVSSNST ISSDTTSSNN NENKTKNYRG  120
VRRRPWGKFA AEIRDPNKKG SRIWLGTFDA DVDAARAYDC AAFKMRGRKA ILNFPMDAGK  180
SGAPANVGRK RRRDNGIQLE MLINL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-28116176161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8744230.0KJ874423.1 Nicotiana tabacum ethylene response factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771892.11e-150PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY053e-50EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A1U7VVR11e-149A0A1U7VVR1_NICSY; ethylene-responsive transcription factor ERF106-like
STRINGXP_009771892.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-48ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]