PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772006.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 272aa    MW: 28764.2 Da    PI: 7.889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k Fs+   L  H  +H
  XP_009772006.1 105 YKCSVCDKAFSSYQALGGHKASH 127
                     9***********99999998887 PP
2zf-C2H213.90.00016164186123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F++   L  H r+H
  XP_009772006.1 164 HVCSICHKAFPTGQALGGHKRRH 186
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-497129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-9104127No hitNo description
PfamPF139125.7E-13105129IPR007087Zinc finger, C2H2
SMARTSM003550.0073105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576677.78E-9159186No hitNo description
PfamPF139128.8E-12164188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619164191IPR007087Zinc finger, C2H2
SMARTSM003550.065164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTLEALKSPT AATPTLPPRY EDDDEIHNLD SWAKGKRSKR PRIDAPPTEE EYLALCLIML  60
ARSGTGTGTG LTDATTSQQP ADKKIAELPP VHKKEVATEQ AEQSYKCSVC DKAFSSYQAL  120
GGHKASHRKT TTTATAASDD NNPSTSTSTG AVNISALNPT GRSHVCSICH KAFPTGQALG  180
GHKRRHYEGK LGGNSRDLGG GGGGHSGSVL TTSDGGASTH TLRDFDLNMP ASPELQLGLS  240
IDCGRKSQLL PMDQEVESPM PAKKPRLLFS LG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0530770.0AF053077.1 Nicotiana tabacum osmotic stress-induced zinc-finger protein (zfp) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772006.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1U7W4790.0A0A1U7W479_NICSY; zinc finger protein ZAT10-like
STRINGXP_009772006.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-54salt tolerance zinc finger