PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772070.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 197aa    MW: 22769.6 Da    PI: 10.108
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08140188348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       W+t E ++lv++v q+G g+W+ I r       + ++ ++k++w+++l
   XP_009772070.1 140 YWSTPEVLKLVEGVSQYGVGRWTDIKRLYFqssAHHSPLDLKDKWRNLL 188
                      6**************************9988**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.034133192IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-10133190IPR009057Homeodomain-like
SuperFamilySSF466897.48E-14135189IPR009057Homeodomain-like
SMARTSM007171.3E-8137190IPR001005SANT/Myb domain
PfamPF002493.8E-6139188IPR001005SANT/Myb domain
CDDcd116601.52E-15141189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSTDRLLEVF SKMFGHQTSV TNKQWLNHHI TFGLQNQDMK CSLVLSENEG SKVLSPASRE  60
ELLKASTAFA SVFNFRKKPR VQHVKRREHI QWNSFKCLSE AQVDSSGCLS DQSNDNTTSE  120
DDWTTGIETR GANQNRKHNY WSTPEVLKLV EGVSQYGVGR WTDIKRLYFQ SSAHHSPLDL  180
KDKWRNLLRA TRQRLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772070.11e-146PREDICTED: uncharacterized protein LOC104222531
RefseqXP_016484749.11e-146PREDICTED: uncharacterized protein LOC107805264
RefseqXP_016484750.11e-146PREDICTED: uncharacterized protein LOC107805264
RefseqXP_016484751.11e-146PREDICTED: uncharacterized protein LOC107805264
TrEMBLA0A1S4B7A61e-145A0A1S4B7A6_TOBAC; uncharacterized protein LOC107805264
TrEMBLA0A1U7WCW91e-145A0A1U7WCW9_NICSY; uncharacterized protein LOC104222531
STRINGXP_009772070.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-18TRF-like 6