PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772253.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 240aa    MW: 27477.8 Da    PI: 6.5138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.3e-20151453128
             NAM   3 pGfrFhP.tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                      G +F+P +d++l+  yL+k v g ++e  + i+++d+y   +P +L +     +++++  y F++ +kk+  gk+ nr +t  g Wk   + k+
  XP_009772253.1  15 IGTKFQPyNDQDLI-SYLQKFVCGMPIES-DRIRHIDVYGNkKPCELFQdllGETSTDHVNYIFTQLKKKSDGGKNYNRsITGGGSWKGRDTGKP 107
                     79*****6688888.9***********99.88******97549****74333222234456******************8999************ PP

             NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                     v +k+g+++glkkt+ f ++ +  + ++  W m+ey l
  XP_009772253.1 108 VRDKEGSVIGLKKTFRFDEEsDIGNNQRIVWSMKEYCL 145
                     *****************96536678899********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-2010171IPR003441NAC domain
PROSITE profilePS5100523.23313172IPR003441NAC domain
PfamPF023651.4E-916145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MATKSERRKF SSCTIGTKFQ PYNDQDLISY LQKFVCGMPI ESDRIRHIDV YGNKKPCELF  60
QDLLGETSTD HVNYIFTQLK KKSDGGKNYN RSITGGGSWK GRDTGKPVRD KEGSVIGLKK  120
TFRFDEESDI GNNQRIVWSM KEYCLSDARL EVLRQRSQIR HEDSVLCSIE KKVNLCKNSQ  180
DISSSSSATI YCGWSLYTEL TKLPPFDGPF ESLTEEELAF FDNPDPGYSH AYENIQEENK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772253.11e-180PREDICTED: NAC domain-containing protein 2-like
RefseqXP_016500359.11e-180PREDICTED: NAC domain-containing protein 2-like
TrEMBLA0A1S4CH841e-179A0A1S4CH84_TOBAC; NAC domain-containing protein 2-like
TrEMBLA0A1U7W0W11e-179A0A1U7W0W1_NICSY; NAC domain-containing protein 2-like
STRINGXP_009772253.11e-180(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-13NAC domain containing protein 2