PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009772485.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 164aa MW: 18927.5 Da PI: 8.6243

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009772485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.3e-17	3	49	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e+k r+vtfskR++g++ KAeE S+ ++a+v v+ fs++gk XP_009772485.1 3 YVESKEARYVTFSKRKAGLFRKAEEFSTVTGADVGVLFFSPSGKPCS 49 5799***************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.02E-20	1	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.236	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-16	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-20	4	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-5	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-5	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKYVESKEAR YVTFSKRKAG LFRKAEEFST VTGADVGVLF FSPSGKPCSY TSTSVEKIIG 60 KFREWKQQNT DEGKSSVFEA FDDLCKYKQD ENEKGKSREL RYKVMYPGVE IPPDKERLEK 120 LVEMKLRLDK INEAAKNHIQ AERLKFDLNI VPEYEVGESS GTHH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772485.1	1e-119	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_016441587.1	1e-119	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3XPK5	1e-117	A0A1S3XPK5_TOBAC; agamous-like MADS-box protein AGL29
TrEMBL	A0A1U7WE39	1e-117	A0A1U7WE39_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009772485.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-16	AGAMOUS-like 29