PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772505.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 369aa    MW: 42566.7 Da    PI: 5.4685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.51.2e-251058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +ie+ +nrqvtfskRrngilKK +ELSvLCd++va+i+fs++g+l  ys
  XP_009772505.1 10 KIESLTNRQVTFSKRRNGILKKIYELSVLCDVDVAIIMFSPSGRLTHYS 58
                    59********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.703161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-22323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRSKLPLLK IESLTNRQVT FSKRRNGILK KIYELSVLCD VDVAIIMFSP SGRLTHYSRK  60
RRIEDVLSEL VYLPDSERGF YINNKESVLW NLRKIEIQDK FCDIERISPA YLNTNDTAKK  120
IQEEINGLHC KLEEAEGLLR IFEPDTKKIT SLHELDLCEK RLQVALNQVR QRMEQLSNNH  180
NTSSYEDNME QINALLQYID NTQTEDTKPS LEESPYDLWL ELEDYSYTNY INDNNNSHLY  240
AASETSSLTQ SSMNLSSPII YDAISQTSIS GVTNYHKEGT FSSLTDENFK QSQHSTRTFP  300
TLTLQTSFKF AKPEMETPTS ALRPVAPYLQ AEAAASSNQQ LPSNNIEEEN HEISWFQPQM  360
KKSKYHHLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-14158158MEF2 CHIMERA
6byy_B4e-14158158MEF2 CHIMERA
6byy_C4e-14158158MEF2 CHIMERA
6byy_D4e-14158158MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-62HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772505.10.0PREDICTED: MADS-box protein AGL24-like isoform X2
TrEMBLA0A1U7WE560.0A0A1U7WE56_NICSY; MADS-box protein AGL24-like isoform X2
STRINGXP_009772504.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-44AGAMOUS-like 104