PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009772546.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 225aa MW: 26167 Da PI: 9.6248

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009772546.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.5	3.2e-15	130	219	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h k ++ +tl de+ ++ k+ k++ l++GW++F+ +++L +gD +vF+l++ ++f +v XP_009772546.1 130 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFVTKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLIEPTKF--KVY 216 89*******************999423..4457***********666665....9*********************987777..888 PP EE- CS B3 96 vfr 98 ++r XP_009772546.1 217 IIR 219 877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-19	121	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.43E-23	123	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.73E-24	128	219	No hit	No description
SMART	SM01019	4.0E-20	130	221	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.237	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-13	130	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVESKKKMLA YEESRLKRLE ENKKRMEELN LNKLVQAVRT ATSPKPSPMK KVKPRVKQEI 60 DRSAVRRSNR VADKPPPNYK DVPIEPLGKP RSYKRRDLLN RVYADDEDRQ YAIERAEQLQ 120 SEIDADFPSF VKPMLQSHVT GGFWLGLPVH FCNTHLPKRD EFVTLIDENE DEFVTKYLAL 180 KRGLSGGWRG FAIDHELVDG DALVFQLIEP TKFKVYIIRV NQAED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772546.1	1e-166	PREDICTED: B3 domain-containing protein At3g19184-like
Refseq	XP_016513011.1	1e-166	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-86	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1S4DHZ2	1e-164	A0A1S4DHZ2_TOBAC; B3 domain-containing protein At3g19184-like
TrEMBL	A0A1U7W5R2	1e-164	A0A1U7W5R2_NICSY; B3 domain-containing protein At3g19184-like
STRING	XP_009772546.1	1e-165	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-85	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]