PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009772834.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 854aa    MW: 94477.3 Da    PI: 6.2999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009772834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-19324423198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++
  XP_009772834.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID-PGGK 416
                     99**************************666667778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_009772834.1 417 LVMGFRK 423
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-30321429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21321425IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-24322423No hitNo description
PfamPF023622.3E-16324423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321324425IPR003340B3 DNA binding domain
SMARTSM010191.7E-21324424IPR003340B3 DNA binding domain
PROSITE profilePS5105014.107552602IPR011124Zinc finger, CW-type
PfamPF074963.0E-11557599IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWSLKSGGF AKLCYNCGSA FENLVFCETF HSEESGWREC  60
KTCRKLIHCG CIASKYLYEY MDYGGVACIN CASQLDGHSI RPIQIPGDDL PNGTLGTKAT  120
QPLGVENKMD ENNFDKRRVM RLSKPVETSE SGQLFQTQKN DIKQETMVPI GNVSTCFSNL  180
NQQPVGAASL FGKPDNDRQS QGVKDMYESI NQPSLNFSLS TLVGASSSAQ PFPGGDVEGR  240
EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNKAMTSQT RVARPPAEGR GGRNQLLPRY  300
WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP  360
IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVIFSR IDPGGKLVMG  420
FRKATNNADM QDPQPSILPN VLPNGSGFAE TSFTGMTENL PNGGRTSDDS VNRQVPISEK  480
KKARNIGSKN KRLLMHADDV MELRITWEEA QELLRPPPTS KPTVVVIEDY EFEEYEEPPV  540
FGKRTIFTAR SSGDQEQWAQ CDSCSKWRRL PVHVLLPAKW TCSDNIWDSR RCSCAAPDEI  600
NPRELEALFR VGKDLKRRKL VENNEDCEPS GLDALATLAV LGDNIGDLGE PSVGATTKHP  660
RHRPGCSCIV CIQPPSGKGK HQPTCKCNVC LTVKRRFKTL MLRKKKKQSE REAELAQAKD  720
QVPPKDGSET DGASGTDHLL HMNQSENEHM NLSENERDTN GDQMEEFGAG KGQLDLNSHP  780
NRDDDMLVEA TAGMTMTSLV NATNLPLEYL TQNGLESLGD SLLSQAAGES ERNHPDNGFM  840
KTADAEQENK GDEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-713024312131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612618KDLKRRK
2693704KRRFKTLMLRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267261e-120AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9754451e-120HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-120HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772834.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1U7WDV90.0A0A1U7WDV9_NICSY; B3 domain-containing transcription repressor VAL1-like
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]