PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773053.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 198aa    MW: 23021.1 Da    PI: 5.2678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.53.4e-0822511543
                    HHH.HHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF 15 kRr.ngilKKAeELSvLCdaevaviifsst 43
                    kR+ ++++K A+ LS+LC++ + +iif + 
  XP_009773053.1 22 KRKiATLFKMAKDLSTLCEVMITIIIFCPG 51
                    666589*********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0062160IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.886148IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-91195IPR002100Transcription factor, MADS-box
PfamPF003194.5E-71151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSEEGLKNTK VCSERQRKAK EKRKIATLFK MAKDLSTLCE VMITIIIFCP GETFPIVWPD  60
ETEAMVRITE YLSHSEYERS KKLVLHETYL EKKIKDLEEE NNRKIARKNK EKEMEILFNQ  120
LFEAKINTSD LDVTQIEGLL KFSARIMAKL DERKKQLNQQ EQTSDDQRPS TSSSSNPTIE  180
GHDNEVGEKN DGLYNDID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11522QRKAKEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773053.11e-145PREDICTED: agamous-like MADS-box protein AGL92
TrEMBLA0A1U7W3791e-143A0A1U7W379_NICSY; agamous-like MADS-box protein AGL92
STRINGXP_009773053.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.13e-12AGAMOUS-like 92