PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773083.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 256aa    MW: 28688.8 Da    PI: 8.2048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-1356103354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr llP+      k  +Ka+ L +Av+++++L
  XP_009773083.1  56 KSHSEAERRRRKRINGHLATLRNLLPNT----IKQTDKASLLAEAVRCVREL 103
                     69*************************8....678*************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.21253103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-1156105No hitNo description
PfamPF000103.8E-1056103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1456114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1357114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1159109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.4E-7166234No hitNo description
SuperFamilySSF550213.05E-6166234No hitNo description
CDDcd048730.00255166231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MINHSFPSFY ELGGCSDSYN FLHGIINSSP EMFNVESSSV VSPRSMAEAK AIAANKSHSE  60
AERRRRKRIN GHLATLRNLL PNTIKQTDKA SLLAEAVRCV RELKKTTSEL GATMSEDDDN  120
TDDFMNYMGS NDQTTMKKFI FPSESDELNL SYCNSNNSGT LLAKATICCE DRPEIMMDLR  180
RALSTVQGKI IRAEMATVGG RIKCILWVQM LENGCREEGL GQLRRALKLV MDKANFLAQN  240
MGQDLLGNKR PRLYQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754433e-52HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755163e-52HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773083.10.0PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBLA0A1U7W3A70.0A0A1U7W3A7_NICSY; transcription factor bHLH30-like isoform X1
STRINGXP_009773083.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-35bHLH family protein