PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773223.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 30991.4 Da    PI: 9.1575
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_009773223.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
                    79***********************************************96 PP
2K-box95.11.1e-31821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++++++ +qe+ kLk ++e Lq++qRh+lGedL++L+ k+L+qLe+q+++sl++iRs++++++++++ elq+ke++l e nk+Lr+klee
  XP_009773223.1  82 QPSTDSQNTYQEYLKLKTRVEVLQQSQRHILGEDLGQLNTKDLEQLERQVDSSLRQIRSTRTQHMIDELTELQQKEESLTEMNKSLRMKLEE 173
                     567889***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-34282IPR002100Transcription factor, MADS-box
CDDcd002652.06E-43276No hitNo description
PRINTSPR004047.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2683171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS  60
SSMSKTVEKY HKYNYAAVEG SQPSTDSQNT YQEYLKLKTR VEVLQQSQRH ILGEDLGQLN  120
TKDLEQLERQ VDSSLRQIRS TRTQHMIDEL TELQQKEESL TEMNKSLRMK LEELGVALQT  180
SWQYGEQSLQ YREQQPDGFF HPVDCNNTMP LRYNTVNQKM QNHQHSMLLK LYLDISLILE  240
GPDYSIKDWE TKLMNVREKK KLIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-29751731103Developmental protein SEPALLATA 3
4ox0_B8e-29751731103Developmental protein SEPALLATA 3
4ox0_C8e-29751731103Developmental protein SEPALLATA 3
4ox0_D8e-29751731103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9999980.0DQ999998.1 Capsicum annuum MADS-box transcription factor MADS-RIN (RIN) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773223.10.0PREDICTED: MADS-box protein CMB1-like isoform X1
SwissprotK4BND81e-108MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1U7W3P60.0A0A1U7W3P6_NICSY; MADS-box protein CMB1-like isoform X1
STRINGXP_009773223.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.17e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]