PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773438.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 369aa    MW: 41995.8 Da    PI: 4.6088
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-15135219286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++e+  L+ea  ++  r +r++l+   W+ev++k+ +  ++er+ +qC+++++ l+k+ykk+k    ++ s ++s+++yf++++
  XP_009773438.1 135 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAENGS-NTSKWVYFKKMD 219
                     *************************************555689**********************99998755.5559*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.365133192IPR017877Myb-like domain
PfamPF138373.3E-21134221No hitNo description
Gene3DG3DSA:1.10.10.603.9E-5134200IPR009057Homeodomain-like
CDDcd001670.00942135187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDDNEDNGRY PPSPYGMNQG YGSSNRAKLP VRDTSYSRHV DDQYVEEADN DEEVDDEEEE  60
DDDDDDGNGV QRIGKDVFED DDDDDYGDSQ RHQKKRKLKS LLSSYEFAPR LPPPSTAAAT  120
APKPSFGGRN PLSDWSEHET FILLEAWGDR FVRHGRKSLR SDEWQEVAEK VSQGSKLERT  180
DTQCRNRLDT LKKKYKKEKM KFAENGSNTS KWVYFKKMDM LLTSTPQQAG ISCGVDSGEY  240
VFMSPKVYLN RANGLDEMRD SPANSGSADG DDDDSEDLPP KRSRNGQSGG NGASFKLIAD  300
SIHKFSEIYV KIENSKRQQM LELEKMRMDF HRDLEMQKRQ IVERAHAEIA RIRQGSDEEN  360
DISAENVSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773438.10.0PREDICTED: uncharacterized protein LOC104223665
TrEMBLA0A1U7W4A70.0A0A1U7W4A7_NICSY; uncharacterized protein LOC104223665
STRINGXP_009773438.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-68Trihelix family protein