PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009773859.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 215aa    MW: 24465.1 Da    PI: 5.2513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009773859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-114792555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  +ErrRR+++ +++ eLr+l+P+      + ++K +i + A+ YI++Lq
  XP_009773859.1 47 NLDAERRRRQKLSERLLELRSLVPNI-----TNMTKETIITDAITYIRELQ 92
                    5579*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-104195No hitNo description
PROSITE profilePS5088815.0154291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1542107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1343107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-84692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-114897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MIIKCDKMEF PNTPFDDSNI SEGSKIGGKM DKRKQIEGEV REYKSKNLDA ERRRRQKLSE  60
RLLELRSLVP NITNMTKETI ITDAITYIRE LQTNVNNLSE QLLEMEATHG EELERKSEEI  120
LDTAEEMANW GIEPEVQVAH IGTNKLWMKI VCQKKRGGFT KLMEAMNVLG FDLNDTSVTA  180
SKGAFLVTSS VEVVRGGLID AHQIREILLE IIRGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-62HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773859.11e-157PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1
TrEMBLA0A1U7WGU41e-155A0A1U7WGU4_NICSY; transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1
STRINGXP_009773859.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-37bHLH family protein